Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
190
ChIP-seq
187
single cell RNA-seq
147
total RNA-seq
48
snATAC-seq
47
WGBS
28
DNase-seq
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
336
Transcription
277
DNA accessibility
190
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
151
histone
151
histone modification
78
broad histone mark
73
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
May, 2021
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
34
October, 2019
26
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
423
bigWig
417
bam
409
fastq
205
bed narrowPeak
170
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
871
Homo sapiens
Biosample type
2433
tissue
871
primary cell
587
cell line
393
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
546
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
438
hg19
346
GRCh38
Lab
511
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
organ_slims!
heart
BIOSAMPLE
ASSAY
871 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
13
12
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
13
12
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
+ See 81 more…
See all biosamples
Download