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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
66
snATAC-seq
3
DNase-seq
Assay category
509
Transcription
481
DNA binding
80
DNA methylation
69
DNA accessibility
29
3D chromatin structure
1
DNA sequencing
Date released
27
February, 2021
22
May, 2022
10
April, 2020
6
August, 2021
2
October, 2019
1
August, 2017
1
August, 2022
Available data
214
bam
214
bed narrowPeak
214
bigBed narrowPeak
bigWig
206
bed broadPeak
206
bigBed broadPeak
205
bed bed3+
41
fastq
21
zippedFastqFolder
1
tar
1
txt
Organism
68
Homo sapiens
Biosample type
50
primary cell
19
tissue
Organ
10
lung
8
kidney
2
epithelium
1
liver
1
musculature of body
1
pancreas
Project
48
HPAP
T1D
11
AMP
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
AMP-T2D consortium
Audit category:
29
audit script error
award.project!
T1D
files.file_type!
bigWig
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
69 results
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snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
lung
10
kidney
6
islet of Langerhans
1
right lobe of liver
1
skeletal muscle tissue
1
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