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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ATAC-seq
5
Hi-C
2
RRBS
2
pCHi-C
Assay category
13
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Date released
8
November, 2019
6
October, 2019
4
March, 2020
2
February, 2023
2
July, 2019
Available data
192
bam
bigWig
129
tsv
61
bed narrowPeak
24
bigBed narrowPeak
9
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
1
txt
Organism
22
Homo sapiens
Biosample type
15
in vitro differentiated cells
4
primary cell
2
cell line
1
tissue
Organ
4
connective tissue
4
epithelium
2
pancreas
1
adipose tissue
1
heart
1
kidney
1
liver
Project
22
AMP
Genome assembly (visualization)
22
hg19
11
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
5
audit script error
1
inconsistent replicate
award.project!
T1D
files.file_type!
bigWig
BIOSAMPLE
ASSAY
22 results
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ATAC-seq
Hi-C
RRBS
pCHi-C
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
1
cardiac precursors (cardiac muscle cell)
1
1
immature adipocyte
2
lymphocyte of B lineage (iPSC)
1
1
primary cell
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cardiac fibroblast
1
epithelial cell of proximal tubule
1
cell line
EndoC_BH1
1
1
tissue
adipose tissue(adipose white tissue)
1
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