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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
18
ChIP-seq
6
single cell RNA-seq
3
Hi-C
2
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
18
DNA binding
8
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
15
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
February, 2021
6
August, 2021
6
October, 2019
3
March, 2020
2
February, 2020
1
July, 2019
Available data
154
bam
bigWig
108
bed narrowPeak
67
tsv
59
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
74
Homo sapiens
Biosample type
57
tissue
10
cell line
7
primary cell
Organ
295
pancreas
223
epithelium
223
kidney
169
heart
169
liver
113
connective tissue
100
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
74
AMP-T2D consortium
Audit category:
1
audit script error
award.project!
T1D
files.file_type!
bigWig
organ_slims!
limb
BIOSAMPLE
ASSAY
74 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
ascending aorta
3
1
thoracic aorta
4
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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