Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
6
single cell RNA-seq
3
ChIP-seq
3
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
9
Transcription
3
3D chromatin structure
3
DNA binding
1
DNA methylation
Target of assay
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
8
February, 2021
6
August, 2021
4
October, 2019
3
February, 2020
3
March, 2020
1
July, 2019
Available data
159
bam
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
4
tagAlign
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
60
Homo sapiens
Biosample type
47
tissue
8
cell line
5
primary cell
Organ
242
pancreas
211
kidney
195
epithelium
149
heart
100
bone element
78
connective tissue
74
liver
61
vasculature
60
blood vessel
54
eye
47
artery
42
adipose tissue
39
brain
22
musculature of body
20
lung
16
skeleton
14
limb
5
gonad
5
ovary
5
vein
2
intestine
1
adrenal gland
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
60
AMP-T2D consortium
Audit category:
1
audit script error
award.project!
T1D
files.file_type!
bigWig
target.investigated_as!
control
BIOSAMPLE
ASSAY
60 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
cell line
smooth muscle cell of the coronary artery
8
primary cell
endothelial cell of umbilical vein
3
2
Download