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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
43
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
control
Date released
92
August, 2021
36
February, 2023
8
February, 2021
5
March, 2020
4
July, 2019
3
February, 2020
1
October, 2019
Available data
bigWig
191
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
hic
Organism
149
Homo sapiens
Biosample type
140
tissue
8
cell line
1
primary cell
Organ
242
pancreas
211
kidney
195
epithelium
149
heart
100
bone element
78
connective tissue
74
liver
61
vasculature
60
blood vessel
54
eye
47
artery
42
adipose tissue
39
brain
22
musculature of body
20
lung
16
skeleton
14
limb
5
gonad
5
ovary
5
vein
2
intestine
1
adrenal gland
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
43
GRCh38
13
hg19
Lab
149
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
award.project!
T1D
files.file_type!
bigWig
target.investigated_as!
control
BIOSAMPLE
ASSAY
149 results
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single cell RNA-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
1
heart left ventricle
18
1
1
1
2
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
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cell line
smooth muscle cell of the coronary artery
8
primary cell
cardiac fibroblast
1
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