Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
187
single cell RNA-seq
151
total RNA-seq
47
WGBS
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
340
Transcription
DNA accessibility
195
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
43
April, 2018
42
May, 2021
31
July, 2019
31
June, 2019
27
October, 2019
20
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2020
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
349
fastq
325
bigWig
315
bam
162
tsv
142
bed narrowPeak
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
604
Homo sapiens
Biosample type
2297
tissue
622
cell line
604
primary cell
351
in vitro differentiated cells
10
stem cell
Organ
315
epithelium
275
pancreas
30
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
376
AMP
227
HPAP
T1D
1
ITG
Genome assembly (visualization)
341
hg19
280
GRCh38
Lab
341
AMP-T2D consortium
227
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
lab.title!
Stephen Parker, UMich
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
604 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
Hi-C
RRBS
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
13
12
52
31
1
Langerhans cell
85
pancreatic beta cell
13
12
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
+ See 50 more…
See all biosamples
Download