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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
47
single cell RNA-seq
23
ATAC-seq
14
total RNA-seq
Assay category
70
DNA binding
61
Transcription
23
DNA accessibility
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
83
May, 2021
47
September, 2023
24
May, 2022
Available data
48
bed narrowPeak
40
bigWig
24
bam
24
fastq
6
txt
2
bed bed3+
Organism
154
Homo sapiens
Biosample type
72
tissue
47
in vitro differentiated cells
35
primary cell
Organ
47
kidney
25
pancreas
Project
T1D
107
AMP
47
KPMP
Genome assembly (visualization)
58
hg19
Lab
3904
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
107
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
award.project!
T1D
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
tissue
kidney
47
islet of Langerhans
18
6
pancreas
1
in vitro differentiated cells
embryonic stem cell
37
5
5
primary cell
CD8-positive, alpha-beta T cell
33
2
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