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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
997
total RNA-seq
903
ChIP-seq
210
ATAC-seq
179
single cell RNA-seq
177
DNase-seq
27
WGBS
22
pCHi-C
17
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1192
Transcription
903
DNA binding
408
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
624
histone modification
623
histone
320
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
240
October, 2019
229
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
39
May, 2021
39
November, 2019
34
March, 2020
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1877
bam
1747
bigWig
1073
tsv
940
bed narrowPeak
560
bigBed narrowPeak
353
fastq
238
tagAlign
212
bed broadPeak
203
bed bed3+
175
bigBed broadPeak
66
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2580
Homo sapiens
Biosample type
2589
tissue
701
primary cell
565
cell line
279
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
487
adipose tissue
451
pancreas
321
liver
313
heart
299
kidney
262
brain
133
blood vessel
133
vasculature
121
limb
79
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
2523
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1853
GRCh38
1710
hg19
Lab
2328
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
month_released!
May, 2022
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
2589 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
279
69
39
6
1
4
1
3
1
1
4
adipose tissue
382
2
3
3
1
liver
147
145
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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