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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
161
ATAC-seq
154
single cell RNA-seq
151
total RNA-seq
31
DNase-seq
27
snATAC-seq
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
307
Transcription
220
DNA accessibility
195
DNA binding
17
DNA methylation
10
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
55
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
433
bigWig
429
bam
409
fastq
211
bed narrowPeak
174
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
750
Homo sapiens
Biosample type
2680
tissue
750
primary cell
653
cell line
394
in vitro differentiated cells
10
stem cell
Organ
326
epithelium
266
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
559
AMP
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
448
hg19
356
GRCh38
Lab
524
AMP-T2D consortium
190
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
month_released!
May, 2022
BIOSAMPLE
ASSAY
750 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
snATAC-seq
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
13
13
12
52
1
6
Langerhans cell
52
27
pancreatic beta cell
13
10
12
21
1
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
2
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