Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
185
ChIP-seq
150
total RNA-seq
48
snATAC-seq
47
WGBS
30
DNase-seq
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
pCHi-C
1
small RNA-seq
Assay category
338
Transcription
279
DNA accessibility
185
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
145
histone
145
histone modification
74
broad histone mark
71
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
May, 2021
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
34
October, 2019
28
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
422
bigWig
416
bam
409
fastq
202
bed narrowPeak
172
tsv
153
zippedFastqFolder
100
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
870
Homo sapiens
Biosample type
2624
tissue
870
primary cell
653
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
545
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
436
hg19
345
GRCh38
Lab
510
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
T1D
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
870 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
DNAme array
FAIRE-seq
pCHi-C
small RNA-seq
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
+ See 84 more…
See all biosamples
Download