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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
48
snATAC-seq
47
WGBS
37
ChIP-seq
10
Hi-C
9
RRBS
2
DNase-seq
1
DNAme array
Assay category
184
Transcription
166
DNA accessibility
57
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
41
May, 2021
12
July, 2019
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
422
bigWig
bam
409
fastq
202
bed narrowPeak
172
tsv
153
zippedFastqFolder
100
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
454
Homo sapiens
Biosample type
803
tissue
454
primary cell
103
in vitro differentiated cells
75
cell line
7
stem cell
Organ
164
epithelium
152
pancreas
5
kidney
5
vasculature
4
blood vessel
4
brain
2
connective tissue
2
liver
2
vein
1
eye
1
heart
musculature of body
Project
324
HPAP
129
AMP
T1D
1
ITG
Genome assembly (visualization)
53
hg19
11
GRCh38
Lab
324
Klaus Kaestner, Upenn
94
AMP-T2D consortium
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
8
inconsistent ontology term
award.project!
T1D
organ_slims!
musculature of body
files.file_type!
bam
BIOSAMPLE
ASSAY
454 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
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