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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
12
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
15
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
22
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
21
October, 2019
13
August, 2017
10
July, 2019
5
March, 2020
4
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
131
bam
120
bigWig
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
59
Homo sapiens
Biosample type
54
tissue
5
primary cell
Organ
702
pancreas
608
connective tissue
478
adipose tissue
371
epithelium
350
liver
202
heart
171
kidney
150
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
11
spleen
9
vein
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
award.project!
T1D
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
1
tibial nerve
11
5
tibial artery
5
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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