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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
39
DNase-seq
24
ATAC-seq
24
total RNA-seq
4
Hi-C
4
pCHi-C
1
WGBS
Assay category
68
DNA binding
63
DNA accessibility
24
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
17
control
17
narrow histone mark
Date released
90
October, 2019
35
June, 2019
17
February, 2023
7
May, 2019
6
February, 2021
5
July, 2019
4
February, 2020
Available data
117
bam
110
bed narrowPeak
94
bigWig
87
bigBed narrowPeak
39
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
10
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
164
Homo sapiens
Biosample type
164
tissue
Organ
912
pancreas
791
liver
683
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
164
AMP
Genome assembly (visualization)
114
hg19
99
GRCh38
Lab
164
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
award.project!
T1D
organ_slims!
epithelium
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
3
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