Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
DNase-seq
36
ChIP-seq
35
ATAC-seq
21
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
73
DNA accessibility
36
DNA binding
21
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
28
histone
28
histone modification
18
broad histone mark
10
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
48
October, 2019
39
June, 2019
31
February, 2023
7
May, 2019
6
February, 2021
6
July, 2019
3
February, 2020
Available data
98
bed narrowPeak
79
bam
66
bigWig
64
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
7
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
140
Homo sapiens
Biosample type
135
tissue
5
primary cell
Organ
912
pancreas
791
liver
683
connective tissue
520
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
99
hg19
71
GRCh38
Lab
140
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
award.project!
T1D
organ_slims!
nerve
BIOSAMPLE
ASSAY
140 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial artery
2
23
1
1
islet of Langerhans
3
1
14
4
muscle of leg
13
7
1
retina
3
15
3
muscle of arm
17
+ See 10 more…
primary cell
retinal pigment epithelial cell
1
3
1
See all biosamples
Download