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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
38
DNase-seq
35
ATAC-seq
25
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
73
DNA accessibility
48
DNA binding
25
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
13
control
1
RNA binding protein
1
transcription factor
Date released
64
October, 2019
39
June, 2019
31
February, 2023
7
May, 2019
6
February, 2021
6
July, 2019
3
February, 2020
Available data
104
bed narrowPeak
95
bam
76
bigWig
70
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
11
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
156
Homo sapiens
Biosample type
151
tissue
5
primary cell
Organ
912
pancreas
791
liver
683
connective tissue
520
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
156
AMP
Genome assembly (visualization)
109
hg19
81
GRCh38
Lab
156
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
award.project!
T1D
organ_slims!
vasculature
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
5
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
3
muscle of arm
17
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primary cell
retinal pigment epithelial cell
3
1
1
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