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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
total RNA-seq
9
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
47
DNA accessibility
6
3D chromatin structure
6
DNA methylation
3
Transcription
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
65
October, 2019
43
June, 2019
26
August, 2017
8
July, 2019
7
May, 2019
6
February, 2021
3
March, 2020
2
May, 2022
1
January, 2018
Available data
123
bam
114
bed narrowPeak
112
bigWig
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
161
Homo sapiens
Biosample type
148
tissue
13
primary cell
Organ
602
liver
518
pancreas
391
epithelium
321
heart
294
kidney
269
brain
209
connective tissue
175
vasculature
169
blood vessel
115
limb
96
bone element
93
adipose tissue
90
musculature of body
85
artery
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
161
AMP
Genome assembly (visualization)
123
hg19
103
GRCh38
Lab
161
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
award.project!
T1D
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
1
skeletal muscle tissue
22
1
4
1
1
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 11 more…
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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