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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
12
total RNA-seq
9
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
15
Transcription
10
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
65
October, 2019
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
Available data
131
bam
120
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
136
Homo sapiens
Biosample type
123
tissue
13
primary cell
Organ
905
pancreas
728
liver
674
connective tissue
498
epithelium
489
adipose tissue
363
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
158
bone element
137
artery
86
limb
63
musculature of body
61
blood
61
bodily fluid
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
94
hg19
74
GRCh38
Lab
136
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
award.project!
T1D
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
5
1
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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