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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
35
DNase-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
63
DNA binding
44
DNA accessibility
10
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
52
histone
52
histone modification
34
broad histone mark
18
narrow histone mark
11
control
Date released
43
June, 2019
27
October, 2019
26
August, 2017
10
July, 2019
7
May, 2019
6
February, 2021
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
89
bam
89
bigWig
87
bed narrowPeak
67
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
130
Homo sapiens
Biosample type
116
tissue
14
primary cell
Organ
912
pancreas
791
liver
683
connective tissue
520
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
100
hg19
80
GRCh38
Lab
130
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
award.project!
T1D
organ_slims!
nerve
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 11 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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