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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
58
total RNA-seq
17
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
58
Transcription
17
DNA binding
3
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
142
February, 2021
21
October, 2019
1
March, 2020
Available data
84
txt
78
bam
73
bigWig
58
tsv
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
164
Homo sapiens
Biosample type
142
tissue
22
primary cell
Organ
912
pancreas
791
liver
683
connective tissue
520
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
164
AMP
T1D
Genome assembly (visualization)
75
hg19
70
GRCh38
Lab
164
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
1
audit script error
award.project!
T1D
organ_slims!
skeleton
BIOSAMPLE
ASSAY
164 results
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RNA microarray
total RNA-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
bone element
84
bone tissue
58
primary cell
endothelial cell of umbilical vein
17
2
2
1
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