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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
9
Transcription
6
3D chromatin structure
DNA methylation
Date released
33
June, 2019
8
July, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
40
bigWig
39
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
51
Homo sapiens
Biosample type
48
tissue
3
primary cell
Organ
675
pancreas
524
connective tissue
412
adipose tissue
342
epithelium
298
kidney
249
heart
232
liver
159
bone element
131
vasculature
129
blood vessel
107
artery
66
brain
55
eye
55
limb
51
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
43
hg19
39
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
award.project!
community
assay_slims!
DNA methylation
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
51 results
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DNase-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
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primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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