Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
17
pCHi-C
11
ATAC-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
88
DNA binding
21
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
45
May, 2020
23
February, 2023
8
January, 2021
7
March, 2020
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
236
Homo sapiens
Biosample type
196
primary cell
31
tissue
9
cell line
Organ
34
pancreas
8
blood
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
4219
AMP
294
HPAP
236
T1D
47
KPMP
19
LungMap
community
1
ITG
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
228
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
award.project!
community
audit.ERROR.category!
audit script error
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
236 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
7
2
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
See all biosamples
Download