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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
pCHi-C
1
FAIRE-seq
Assay category
148
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
49
November, 2017
30
June, 2019
18
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
2
November, 2018
1
February, 2023
Available data
182
bam
162
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
214
Homo sapiens
Biosample type
193
tissue
21
primary cell
Organ
867
pancreas
746
liver
635
connective tissue
480
epithelium
469
adipose tissue
337
kidney
333
heart
214
brain
190
vasculature
184
blood vessel
158
bone element
127
artery
88
limb
75
musculature of body
69
blood
69
bodily fluid
57
eye
33
embryo
27
nerve
20
spleen
19
lung
18
ureter
16
skeleton
13
vein
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
214
AMP
Genome assembly (visualization)
156
GRCh38
139
hg19
Lab
214
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
award.project!
community
assay_title!
pCHi-C
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
7
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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