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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
63
total RNA-seq
32
DNase-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
172
DNA binding
70
Transcription
35
DNA accessibility
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
58
February, 2021
30
June, 2019
25
May, 2019
16
July, 2019
7
October, 2017
2
November, 2018
Available data
309
bam
280
bigWig
211
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
260
tissue
20
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
280
AMP
Genome assembly (visualization)
272
GRCh38
217
hg19
Lab
280
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
award.project!
community
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
bone tissue
58
brain
11
1
14
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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