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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
36
DNase-seq
36
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
103
DNA binding
69
DNA accessibility
43
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
narrow histone mark
70
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
60
November, 2017
36
June, 2019
32
February, 2023
31
October, 2019
19
July, 2019
18
May, 2019
14
October, 2017
13
February, 2020
2
March, 2020
2
November, 2018
Available data
144
bam
129
bed narrowPeak
121
bigWig
99
bigBed narrowPeak
64
tagAlign
43
bed broadPeak
39
bed bed3+
39
bigBed broadPeak
31
tsv
17
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
227
Homo sapiens
Biosample type
205
tissue
22
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
227
AMP
Genome assembly (visualization)
115
GRCh38
105
hg19
Lab
227
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
award.project!
community
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
227 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
16
14
1
1
1
retina
3
3
15
islet of Langerhans
14
2
4
layer of hippocampus
15
pigmented layer of retina
2
12
+ See 31 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
retinal pigment epithelial cell
2
1
1
brain pericyte
1
1
+ See 3 more…
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