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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
102
single cell RNA-seq
59
total RNA-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
195
DNA binding
DNA accessibility
163
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
59
September, 2018
54
August, 2017
48
July, 2018
43
April, 2018
42
May, 2021
31
July, 2019
31
June, 2019
27
October, 2019
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
2
February, 2021
2
May, 2020
2
October, 2018
1
March, 2020
1
November, 2018
Available data
325
bigWig
315
bam
217
fastq
156
tsv
142
bed narrowPeak
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bedpe bed3+
Organism
376
Homo sapiens
Biosample type
2201
tissue
620
cell line
376
primary cell
351
in vitro differentiated cells
8
stem cell
Organ
212
epithelium
172
pancreas
30
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
376
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
338
hg19
279
GRCh38
Lab
341
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
34
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
33
2
pancreatic alpha cell
13
12
10
pancreatic beta cell
13
12
10
pancreatic ductal cell
13
10
4
pancreatic acinar cell
8
12
4
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