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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
102
single cell RNA-seq
59
total RNA-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
163
Transcription
138
DNA binding
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
106
histone
106
histone modification
57
broad histone mark
49
narrow histone mark
35
control
Date released
59
September, 2018
48
July, 2018
43
April, 2018
42
May, 2021
40
August, 2017
31
July, 2019
17
October, 2019
8
June, 2019
5
December, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
February, 2021
2
May, 2020
2
October, 2018
1
March, 2020
1
May, 2019
1
November, 2018
Available data
325
bigWig
315
bam
217
fastq
156
tsv
142
bed narrowPeak
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bedpe bed3+
Organism
319
Homo sapiens
Biosample type
1864
tissue
337
in vitro differentiated cells
319
primary cell
267
cell line
8
stem cell
Organ
190
epithelium
172
pancreas
21
connective tissue
18
kidney
16
vasculature
14
blood vessel
11
liver
10
brain
9
vein
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
319
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
281
hg19
223
GRCh38
Lab
284
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
319 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
33
2
pancreatic alpha cell
13
12
10
pancreatic beta cell
13
12
10
pancreatic ductal cell
13
10
4
pancreatic acinar cell
8
12
4
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