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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
98
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
199
histone modification
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
648
February, 2021
318
November, 2017
217
August, 2021
202
August, 2017
169
May, 2020
168
July, 2018
157
May, 2021
100
July, 2019
85
October, 2019
78
November, 2018
63
December, 2017
53
March, 2020
49
April, 2018
46
October, 2018
35
December, 2018
28
May, 2019
27
May, 2022
27
September, 2018
25
February, 2020
25
November, 2019
23
February, 2018
23
January, 2019
20
April, 2019
14
February, 2023
14
November, 2020
12
June, 2019
10
December, 2019
6
September, 2017
5
January, 2018
5
May, 2024
4
August, 2018
4
May, 2023
3
June, 2018
3
October, 2017
1
March, 2019
1
October, 2022
Available data
176
fastq
170
bam
140
bigWig
89
tsv
25
bed narrowPeak
21
bed bed3+
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
201
Homo sapiens
Biosample type
156
tissue
30
in vitro differentiated cells
16
primary cell
Organ
117
pancreas
54
connective tissue
24
adipose tissue
20
liver
12
epithelium
7
musculature of body
Project
202
AMP
Genome assembly (visualization)
144
hg19
140
GRCh38
Lab
202
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
DNA accessibility
target.investigated_as!
histone
BIOSAMPLE
ASSAY
202 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
14
89
liver
16
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
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in vitro differentiated cells
adipocyte
30
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
3
1
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