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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
29
ATAC-seq
6
pCHi-C
3
Hi-C
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
Assay category
DNA binding
102
Transcription
31
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Date released
88
February, 2021
20
May, 2021
10
August, 2021
8
March, 2020
7
October, 2019
5
January, 2019
3
November, 2019
1
December, 2018
1
February, 2023
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
115
bam
109
bigWig
108
tsv
12
bed narrowPeak
7
fastq
3
bed bed3+
2
bigBed narrowPeak
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
145
Homo sapiens
Biosample type
1556
tissue
362
primary cell
179
in vitro differentiated cells
147
cell line
5
stem cell
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
56
epithelium
56
pancreas
10
liver
8
embryo
7
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
147
AMP
2
T1D
Genome assembly (visualization)
120
hg19
116
GRCh38
Lab
147
AMP-T2D consortium
16
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
58
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
147 results
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total RNA-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
31
19
1
2
1
HepG2
5
1
2
1
1
H1-hESC
8
Panc1
1
1
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