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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
ATAC-seq
8
DNase-seq
7
snATAC-seq
5
FAIRE-seq
Assay category
1690
DNA binding
1574
Transcription
487
DNA accessibility
50
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
88
February, 2023
82
August, 2021
38
May, 2022
34
May, 2021
26
November, 2019
26
October, 2019
22
February, 2021
14
September, 2018
11
August, 2017
11
May, 2023
8
July, 2019
8
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
1
August, 2022
1
November, 2018
1
November, 2020
Available data
492
bed narrowPeak
389
bam
340
bigWig
241
bigBed narrowPeak
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
65
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
487
Homo sapiens
Biosample type
262
tissue
156
primary cell
39
in vitro differentiated cells
30
cell line
Organ
96
pancreas
85
kidney
58
epithelium
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
24
liver
22
connective tissue
12
bone element
12
skeleton
8
limb
6
adipose tissue
5
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
487
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
267
hg19
227
GRCh38
Lab
353
AMP-T2D consortium
81
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
40
inconsistent ontology term
1
audit script error
1
inconsistent replicate
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
487 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
57
1
1
1
coronary artery
36
liver
20
retina
15
+ See 31 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 38 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 5 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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