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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ATAC-seq
8
snATAC-seq
6
DNase-seq
5
FAIRE-seq
Assay category
1697
DNA binding
1576
Transcription
490
DNA accessibility
50
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
92
February, 2023
82
August, 2021
39
May, 2022
34
May, 2021
26
November, 2019
26
October, 2019
22
February, 2021
14
September, 2018
11
May, 2023
9
August, 2017
8
July, 2019
8
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
1
August, 2022
1
November, 2018
1
November, 2020
Available data
492
bed narrowPeak
389
bam
340
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
bigBed broadPeak
65
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
490
Homo sapiens
Biosample type
263
tissue
155
primary cell
42
in vitro differentiated cells
30
cell line
Organ
96
pancreas
85
kidney
58
epithelium
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
25
connective tissue
24
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
5
brain
2
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
490
AMP
97
HPAP
29
T1D
9
LungMap
Genome assembly (visualization)
270
hg19
226
GRCh38
Lab
356
AMP-T2D consortium
81
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
2
audit script error
1
inconsistent replicate
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
490 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
57
1
1
1
coronary artery
36
liver
20
retina
15
+ See 31 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 38 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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