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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ATAC-seq
212
DNase-seq
28
WGBS
21
RRBS
8
snATAC-seq
5
FAIRE-seq
1
DNAme array
Assay category
1743
DNA binding
1576
Transcription
696
DNA accessibility
50
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
92
February, 2023
82
August, 2021
39
May, 2022
35
July, 2019
35
May, 2021
33
October, 2019
26
August, 2017
26
November, 2019
22
February, 2021
17
November, 2018
14
September, 2018
11
May, 2023
8
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
2
November, 2020
1
August, 2022
Available data
492
bed narrowPeak
407
bam
357
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
80
fastq
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
746
Homo sapiens
Biosample type
477
tissue
194
primary cell
43
in vitro differentiated cells
32
cell line
Organ
167
kidney
109
pancreas
87
heart
80
epithelium
61
vasculature
58
blood vessel
49
artery
45
limb
41
connective tissue
41
musculature of body
39
brain
36
liver
33
eye
18
ureter
14
adipose tissue
12
bone element
12
skeleton
4
spleen
3
nerve
3
vein
1
blood
1
bodily fluid
1
pericardium
1
pituitary gland
1
skin of body
Project
746
AMP
144
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
472
hg19
448
GRCh38
Lab
612
AMP-T2D consortium
81
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
48
inconsistent ontology term
2
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
746 results
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Clear Filters
ATAC-seq
DNase-seq
WGBS
RRBS
snATAC-seq
FAIRE-seq
DNAme array
tissue
kidney
75
13
1
6
1
islet of Langerhans
57
1
1
1
1
coronary artery
36
2
liver
20
2
3
1
heart
18
1
+ See 63 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
1
macrophage
11
pancreatic beta cell
7
+ See 56 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
HepG2
1
1
GM12878
1
Panc1
1
+ See 1 more…
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