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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
153
ChIP-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
25
DNA accessibility
6
DNA methylation
Date released
10
February, 2023
7
August, 2017
5
February, 2021
3
October, 2019
2
August, 2021
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
11
bigWig
8
bed narrowPeak
7
bam
6
bed bed3
5
fastq
4
bed bed3+
4
bed bedgraph
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
31
Homo sapiens
Biosample type
17
in vitro differentiated cells
12
tissue
2
primary cell
Organ
96
pancreas
75
kidney
55
heart
54
epithelium
48
blood vessel
48
vasculature
45
artery
31
connective tissue
28
eye
28
liver
12
adipose tissue
12
bone element
12
skeleton
9
limb
4
brain
3
spleen
2
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
Project
31
AMP
Genome assembly (visualization)
25
hg19
7
GRCh38
Lab
29
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
31 results
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ATAC-seq
WGBS
in vitro differentiated cells
adipocyte
8
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
adipose tissue
3
3
subcutaneous abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
osteoblast
2
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