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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ATAC-seq
293
ChIP-seq
146
total RNA-seq
122
single cell RNA-seq
87
RNA microarray
39
pCHi-C
30
Hi-C
21
RRBS
10
MeRIP-seq
10
WGBS
8
snATAC-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
DNase-seq
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
122
Transcription
1
DNA sequencing
Date released
107
August, 2021
6
February, 2021
3
December, 2019
3
May, 2023
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
205
tsv
bam
100
bigWig
94
fastq
13
txt
8
csv
1
vcf
Organism
123
Homo sapiens
Biosample type
118
tissue
2
in vitro differentiated cells
2
primary cell
1
cell line
Organ
93
heart
17
kidney
6
blood vessel
6
vasculature
2
artery
2
liver
1
musculature of body
Project
123
AMP
85
HPAP
47
KPMP
9
LungMap
Lab
111
AMP-T2D consortium
11
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
123 results
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single cell RNA-seq
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
17
+ See 12 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
primary cell
pancreatic cell
2
cell line
HepG2
1
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