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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
878
DNA binding
412
Transcription
257
DNA accessibility
14
3D chromatin structure
12
DNA methylation
1
DNA sequencing
Date released
4
July, 2019
4
October, 2019
3
March, 2020
1
August, 2021
1
December, 2018
1
November, 2019
Available data
8
hic
7
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
1
fastq
Organism
14
Homo sapiens
Biosample type
tissue
6
primary cell
4
cell line
4
in vitro differentiated cells
Organ
5
epithelium
4
blood vessel
4
vasculature
3
brain
3
liver
2
pancreas
2
vein
1
connective tissue
Project
14
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
14 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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