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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ATAC-seq
142
ChIP-seq
102
single cell RNA-seq
59
total RNA-seq
29
DNase-seq
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
FAIRE-seq
1
pCHi-C
Assay category
177
DNA accessibility
163
Transcription
142
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
115
histone
115
histone modification
62
broad histone mark
53
narrow histone mark
22
control
8
RNA binding protein
8
transcription factor
Date released
102
May, 2020
73
September, 2018
August, 2017
55
June, 2019
55
May, 2021
48
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
376
bigWig
370
bam
182
fastq
177
bed narrowPeak
168
tsv
89
bigBed narrowPeak
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
4
tagAlign
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
Organism
499
Homo sapiens
Biosample type
2393
tissue
651
cell line
499
primary cell
326
in vitro differentiated cells
8
stem cell
Organ
224
epithelium
153
pancreas
38
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
499
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
397
hg19
303
GRCh38
Lab
464
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
32
missing controlled_by
assay_title!
FAIRE-seq
month_released!
August, 2017
BIOSAMPLE
ASSAY
499 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
2
33
2
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
4
pancreatic beta cell
6
12
10
pancreatic alpha cell
5
12
10
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