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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
25
DNase-seq
9
RRBS
2
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
176
DNA accessibility
172
DNA binding
161
Transcription
10
DNA methylation
2
3D chromatin structure
Target of assay
136
histone
136
histone modification
69
broad histone mark
67
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
May, 2021
51
June, 2019
48
July, 2018
43
April, 2018
26
July, 2019
13
October, 2019
12
February, 2023
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
397
bam
394
bigWig
234
fastq
190
bed narrowPeak
166
tsv
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
Organism
522
Homo sapiens
Biosample type
2543
tissue
585
cell line
522
primary cell
394
in vitro differentiated cells
8
stem cell
Organ
253
epithelium
194
pancreas
38
connective tissue
36
kidney
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
522
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
414
hg19
323
GRCh38
Lab
487
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
48
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
organ_slims!
vasculature
BIOSAMPLE
ASSAY
522 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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