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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
10
RRBS
4
DNase-seq
2
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
192
DNA binding
161
Transcription
156
DNA accessibility
11
DNA methylation
2
3D chromatin structure
Target of assay
150
histone
150
histone modification
77
broad histone mark
73
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
53
May, 2021
48
July, 2018
43
April, 2018
32
October, 2019
31
June, 2019
27
July, 2019
12
February, 2023
9
November, 2017
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
2
February, 2021
2
October, 2018
1
August, 2021
1
March, 2020
1
November, 2018
Available data
429
bam
423
bigWig
240
fastq
211
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
522
Homo sapiens
Biosample type
2475
tissue
648
cell line
522
primary cell
369
in vitro differentiated cells
5
stem cell
Organ
233
epithelium
194
pancreas
30
connective tissue
29
vasculature
26
kidney
25
blood vessel
20
vein
13
brain
13
musculature of body
10
heart
8
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
522
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
415
hg19
315
GRCh38
Lab
489
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
46
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
522 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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