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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
59
total RNA-seq
10
RRBS
7
DNase-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
164
DNA binding
163
Transcription
159
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
134
histone
134
histone modification
70
broad histone mark
64
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
June, 2019
55
May, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
376
bigWig
374
bam
240
fastq
168
tsv
164
bed narrowPeak
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
16
tagAlign
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
504
Homo sapiens
Biosample type
2517
tissue
651
cell line
504
primary cell
394
in vitro differentiated cells
8
stem cell
Organ
234
epithelium
194
pancreas
33
vasculature
29
blood vessel
23
kidney
22
vein
21
connective tissue
16
brain
12
liver
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
504
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
405
hg19
298
GRCh38
Lab
469
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
24
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
BIOSAMPLE
ASSAY
504 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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