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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
MeRIP-seq
Assay category
32
DNA binding
Target of assay
232
histone
232
histone modification
123
broad histone mark
109
narrow histone mark
37
control
29
transcription factor
11
RNA binding protein
5
nucleotide modification
Date released
19
August, 2017
8
May, 2021
5
November, 2020
4
August, 2021
1
October, 2017
Available data
bam
168
fastq
68
tagAlign
23
bigWig
9
bed bed3+
3
tsv
Organism
37
Homo sapiens
Biosample type
20
tissue
7
cell line
7
in vitro differentiated cells
3
primary cell
Organ
11
pancreas
7
connective tissue
7
liver
5
adipose tissue
3
epithelium
3
musculature of body
1
brain
Project
37
AMP
Genome assembly (visualization)
3
hg19
Lab
20
AMP-T2D consortium
8
Kyle Gaulton, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bam
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
MeRIP-seq
tissue
islet of Langerhans
6
2
subcutaneous abdominal adipose tissue
5
liver
3
skeletal muscle tissue
3
brain
1
cell line
HepG2
4
EndoC_BH1
3
in vitro differentiated cells
embryonic stem cell
5
adipocyte
2
primary cell
CD8-positive, alpha-beta T cell
3
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