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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
total RNA-seq
62
ChIP-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
106
Transcription
62
DNA binding
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
24
transcription factor
21
control
20
histone
20
histone modification
11
broad histone mark
9
narrow histone mark
7
recombinant protein
3
nucleotide modification
2
RNA binding protein
Date released
87
February, 2021
44
August, 2021
28
October, 2019
15
November, 2019
6
March, 2020
6
November, 2020
4
May, 2021
1
February, 2023
1
May, 2020
1
October, 2022
Available data
566
bam
513
bigWig
fastq
390
bed narrowPeak
353
bigBed narrowPeak
116
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
191
Homo sapiens
Biosample type
1905
tissue
211
in vitro differentiated cells
193
cell line
159
primary cell
4
stem cell
Organ
68
pancreas
58
artery
58
blood vessel
58
heart
58
vasculature
55
epithelium
33
liver
18
kidney
8
embryo
1
mammary gland
Project
193
AMP
9
T1D
2
community
Genome assembly (visualization)
144
hg19
127
GRCh38
Lab
153
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
69
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
fastq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
193 results
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Clear Filters
total RNA-seq
ChIP-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
6
EndoC_BH1
31
13
6
1
2
1
HepG2
9
18
2
2
1
1
Panc1
13
1
H1-hESC
8
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