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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
ATAC-seq
200
DNase-seq
8
snATAC-seq
3
FAIRE-seq
Assay category
1331
Transcription
886
DNA binding
631
DNA accessibility
35
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
92
February, 2023
82
August, 2021
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
21
May, 2022
11
May, 2023
8
July, 2019
4
March, 2020
3
January, 2018
3
March, 2019
2
August, 2017
2
November, 2020
1
August, 2022
Available data
492
bed narrowPeak
389
bam
340
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
fastq
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
631
Homo sapiens
Biosample type
398
tissue
160
primary cell
42
in vitro differentiated cells
31
cell line
Organ
163
kidney
77
heart
58
vasculature
56
blood vessel
52
epithelium
52
pancreas
49
artery
44
limb
35
musculature of body
34
brain
32
eye
30
connective tissue
25
liver
18
ureter
12
bone element
12
skeleton
5
adipose tissue
3
nerve
3
vein
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
631
AMP
60
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
390
hg19
388
GRCh38
Lab
517
AMP-T2D consortium
81
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
46
inconsistent ontology term
2
audit script error
1
inconsistent replicate
files.file_type!
fastq
BIOSAMPLE
ASSAY
631 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
coronary artery
36
2
islet of Langerhans
37
1
liver
20
heart
18
+ See 57 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
cardiac fibroblast
3
+ See 52 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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