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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
101
ChIP-seq
31
total RNA-seq
30
DNase-seq
9
RRBS
8
single cell RNA-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
160
DNA accessibility
101
DNA binding
41
Transcription
10
DNA methylation
6
3D chromatin structure
Target of assay
80
histone
80
histone modification
45
broad histone mark
35
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
102
May, 2020
55
June, 2019
55
May, 2021
34
October, 2019
31
July, 2019
12
February, 2023
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
1
August, 2017
1
March, 2020
Available data
429
bam
423
bigWig
fastq
211
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
319
Homo sapiens
Biosample type
2303
tissue
319
primary cell
253
in vitro differentiated cells
224
cell line
4
stem cell
Organ
85
epithelium
36
kidney
35
connective tissue
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
5
eye
5
pancreas
2
adipose tissue
2
artery
1
pericardium
Project
319
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
219
hg19
126
GRCh38
Lab
284
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
1
audit script error
files.file_type!
fastq
files.file_type!!
fastq
BIOSAMPLE
ASSAY
319 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
RRBS
single cell RNA-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
2
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
monocyte
15
1
1
1
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