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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
11
total RNA-seq
10
Hi-C
4
ATAC-seq
Assay category
11
Transcription
10
3D chromatin structure
4
DNA accessibility
Date released
670
February, 2021
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
106
February, 2023
82
November, 2017
80
April, 2019
61
November, 2019
57
March, 2020
42
May, 2022
40
May, 2024
25
February, 2020
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
4
March, 2019
3
January, 2018
1
August, 2022
1
October, 2022
Available data
43
tsv
15
bigWig
12
bedpe bed3+
11
bam
10
hic
2
ibed
Organism
57
Homo sapiens
Biosample type
36
tissue
8
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
7
heart
7
pancreas
5
musculature of body
4
blood vessel
4
vasculature
3
epithelium
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
57
AMP
7
T1D
Genome assembly (visualization)
27
hg19
11
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
57 results
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pCHi-C
total RNA-seq
Hi-C
ATAC-seq
tissue
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
liver
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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