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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
27
DNase-seq
10
RRBS
2
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
178
DNA accessibility
175
DNA binding
161
Transcription
11
DNA methylation
2
3D chromatin structure
Target of assay
137
histone
137
histone modification
69
broad histone mark
68
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
May, 2021
53
June, 2019
48
July, 2018
43
April, 2018
27
July, 2019
13
October, 2019
12
February, 2023
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
November, 2018
Available data
402
bam
399
bigWig
237
fastq
194
bed narrowPeak
166
tsv
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
Organism
528
Homo sapiens
Biosample type
2547
tissue
584
cell line
528
primary cell
394
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
38
connective tissue
37
vasculature
36
kidney
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
528
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
420
hg19
327
GRCh38
Lab
493
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
vcf
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
528 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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