Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
Hi-C
12
ATAC-seq
Assay category
19
3D chromatin structure
12
DNA accessibility
Date released
10
February, 2023
10
March, 2020
4
October, 2019
2
August, 2021
2
February, 2021
2
November, 2019
1
March, 2019
Available data
3206
bam
2973
bigWig
1729
bed narrowPeak
1496
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
31
Homo sapiens
Biosample type
16
tissue
9
in vitro differentiated cells
3
cell line
3
primary cell
Organ
6
connective tissue
4
bone element
4
pancreas
4
skeleton
3
blood vessel
3
epithelium
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
1
brain
1
kidney
Project
31
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
31
hg19
2
GRCh38
Lab
28
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
1
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
31 results
search-icon
table-tab-icon
Clear Filters
Hi-C
ATAC-seq
tissue
islet of Langerhans
2
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
+ See 9 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
1
EndoC_BH1
1
primary cell
endothelial cell of umbilical vein
2
osteoblast
1
See all biosamples
Download