Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ATAC-seq
1
Hi-C
Assay category
8
DNA accessibility
1
3D chromatin structure
Date released
6
February, 2023
2
February, 2021
1
March, 2019
Available data
3140
bam
2915
bigWig
1721
bed narrowPeak
1438
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
273
bed bed3+
73
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
9
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
tissue
1
cell line
1
primary cell
Organ
6
connective tissue
bone element
4
skeleton
1
brain
1
liver
1
pancreas
Project
9
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
8
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
organ_slims!
bone element
BIOSAMPLE
ASSAY
9 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
in vitro differentiated cells
chondrocyte
5
tissue
brain
1
islet of Langerhans
1
cell line
HepG2
1
primary cell
osteoblast
1
Download