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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
44
ChIP-seq
Assay category
106
DNA accessibility
44
DNA binding
Target of assay
33
histone
33
histone modification
21
broad histone mark
12
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
80
August, 2021
38
May, 2022
30
May, 2021
2
February, 2023
Available data
150
bed narrowPeak
80
bigWig
66
txt
64
xls
26
fastq
25
bam
10
tsv
4
bed bed3+
3
bed bedgraph
3
hic
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
150
Homo sapiens
Biosample type
102
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
34
liver
18
pancreas
2
connective tissue
Project
150
AMP
84
T1D
Genome assembly (visualization)
86
hg19
64
GRCh38
Lab
AMP-T2D consortium
64
Katalin Susztak, Upenn
48
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
150 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
liver
20
islet of Langerhans
18
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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