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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
Hi-C
17
WGBS
3
pCHi-C
Assay category
36
DNA methylation
17
3D chromatin structure
Date released
23
July, 2019
12
March, 2020
7
November, 2018
6
August, 2017
3
October, 2019
2
August, 2021
2
November, 2019
1
August, 2018
Available data
3206
bam
2973
bigWig
1729
bed narrowPeak
1496
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
56
Homo sapiens
Biosample type
35
tissue
11
primary cell
7
in vitro differentiated cells
3
cell line
Organ
11
heart
10
pancreas
8
epithelium
6
musculature of body
5
liver
4
connective tissue
4
kidney
4
vasculature
3
adipose tissue
3
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
56
AMP
3
HPAP
Genome assembly (visualization)
37
hg19
17
GRCh38
Lab
54
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
BIOSAMPLE
ASSAY
56 results
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RRBS
Hi-C
WGBS
pCHi-C
tissue
heart left ventricle
1
1
2
pancreas
1
1
2
heart right ventricle
1
2
islet of Langerhans
1
2
adipose tissue
2
+ See 12 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
+ See 6 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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