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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
84
ChIP-seq
Assay category
106
DNA accessibility
84
DNA binding
Target of assay
68
histone
68
histone modification
41
broad histone mark
27
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
80
August, 2021
40
May, 2024
38
May, 2022
30
May, 2021
2
February, 2023
Available data
190
bed narrowPeak
120
bigWig
66
txt
64
xls
26
fastq
25
bam
10
tsv
4
bed bed3+
3
bed bedgraph
3
hic
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
0
bigBed bedMethyl
Organism
190
Homo sapiens
Biosample type
142
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
40
heart
34
liver
18
pancreas
2
connective tissue
Project
190
AMP
84
T1D
Genome assembly (visualization)
104
GRCh38
86
hg19
Lab
AMP-T2D consortium
64
Katalin Susztak, Upenn
48
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
190 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
liver
20
islet of Langerhans
18
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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